THInCR - The HPV Induced Cancer Resource
THInCR - Correlation of Cellular mRNA Expression and HPV Status
Description: The purpose of this analysis is to compare expression of candidate cellular mRNAs between HPV+, HPV- and normal control tissue from the TCGA cervical (CESC) and head & neck cancer (HNSC) cohorts. Select the candidate mRNA by typing the name in the input box on the top right. Generated figures can be resized via dragging the right or bottom figure edges, or via the grey triangle in the bottom right edge of the figure. Box plots can be downloaded as PNG files and the information necessary to reproduce the box plots can be downloaded as a CSV file. Level 3 mRNA expression data from the TCGA HNSC and CESC cohorts was downloaded from the Broad Genome Data Analysis Center’s Firehose server Link . HPV status was annotated as described in Gameiro et al, Viruses 2017 DOI: 10.3390/v9090252
Download the Differentially Expressed Gene (DEG) Analysis: Click Here
Video Guide: Click Here
Citing THInCR: Salnikov M, Gameiro SF, Zeng PYF, Barrett JW, Nichols AC, Mymryk JS. 2022. The HPV Induced Cancer Resource (THInCR): a Suite of Tools for Investigating HPV-Dependent Human Carcinogenesis. mSphere. 7(4): e0031722.
